Life123 : Dynamical Modeling of Biological Systems
Technology Stack
Currently used:
- Python
- NumPy
- SciPy (for Fourier Transforms)
- Visualizations with plotly, D3.js, Vue.js and Cytoscape.js
- JupyterLab – just for the experiments (NOT for the software libraries)
- Unit testing with PyTest
Upcoming (expected):
- Finite-Element PDE solvers (discussion)
- GPU acceleration
- Multiple CPU cores
- Perhaps Dask for parallel processing
- Neo4j Graph database
- TensorFlow machine learning
Upcoming (experimental/hypothetical):
Software repository