Life123 : Open-Source Engine for Quantitative Reactomics
Dynamical Modeling of Biological Systems ♦ Python Libraries ♦ In-Silico Experiments
Technology Stack
Software repository
Technical Overview
Try it out live!
Currently used:
- Python
- NumPy
- SciPy (for Fourier Transforms)
- Visualizations with plotly, D3.js, Vue.js and Cytoscape.js
- JupyterLab – just for the experiments (NOT for the software libraries)
- Unit testing with PyTest
- Python-based ODE and PDE solvers (forward Euler method)
Upcoming (imminent):
- Neo4j Graph database (see sister project BrainAnnex.org)
- Alternate ODE solvers
Upcoming (expected):
- Finite-Element PDE solvers (discussion)
- GPU acceleration
- Multiple CPU cores
- Perhaps Dask for parallel processing
- TensorFlow machine learning
Upcoming (experimental/hypothetical):