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Life123 : Open-Source Engine for Quantitative Reactomics
Dynamical Modeling of Biological Systems   ♦   In-Silico Experiments
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A PLATFORM for SYSTEMS BIOLOGY (Dynamical Modeling)

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A PLATFORM for SYSTEMS BIOLOGY

A growing set of tools to wrestle the complications of numerical solutions to complex dynamical systems, such as cycles and webs of biochemical reactions, optionally with macro-molecules, spatial components and diffusion (plus, upcoming, membranes.)

ONLY 1/2 OF THE BATTLE, is to offer functionality to set up and simulate the system...

The OTHER 1/2 OF THE BATTLE is a battery of tools: A collaboration of software engineering, data science, numerical methods, biochemistry & biology, among other fields

Project's Motivation and Vision. Project's History


Examples


From experiment macromolecules_1:

Release Beta 28.2


From experiment A cycle of reactions:

CLICK ON IMAGE FOR INTERACTIVE VERSION : Network Visualization in release Beta 31


From experiment variable_steps_1:

Release Beta 25


From experiment negative_concentrations_1:

Release Beta 24


From experiment impossible_1:

Release Beta 23


From experiment large_time_steps_1:

Release Beta 22


From experiment cycles_1:

Release Beta 21


From experiment down_regulate_1:

Release Beta 20


From experiment cascade_1:

Release Beta 19


Version History