Short-term runs on a hosted JupyterLab environment
8-min video – best watched full-screen, at high resolution!
A PLATFORM for SYSTEMS BIOLOGY
A growing set of tools to wrestle the complications of numerical solutions to complex dynamical systems,
such as cycles and webs of biochemical reactions, optionally with macro-molecules, spatial components and diffusion (plus, upcoming, membranes.)
ONLY 1/2 OF THE BATTLE, is to offer functionality to set up and simulate the system...
The OTHER 1/2 OF THE BATTLE is a battery of tools:
to tame numerical instabilities
to throttle up/down the computational effort
to visualize & analyze the results
to provide helpful diagnostics
to integrate high-performance computing
to provide an API that is simple, convenient & intuitive
A collaboration of software engineering, data science, numerical methods, biochemistry & biology, among other fields