Life123 : Dynamical Modeling of Biological Systems
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    A PLATFORM for SYSTEMS BIOLOGY (Dynamical Modeling)

  • Project's Motivation and Vision.         Project's History
  • Software repository   (run locally or on cloud.)    As of April 2024 : in a late Beta stage, approaching Release Candidate
  • Jupyter Notebooks (incl. their graphics) can be viewed on the Experiments page
  • Life123 can be TRIED LIVE at Binder, with 1 click!
    (say Cancel when asked to include "jupyterlab-dash" in the build!)

    Short-term runs on a hosted JupyterLab environment
   
  8-min video – best watched full-screen, at high resolution!  

A PLATFORM for SYSTEMS BIOLOGY

A growing set of tools to wrestle the complications of numerical solutions to complex dynamical systems, such as cycles and webs of biochemical reactions, optionally with macro-molecules, spatial components and diffusion (plus, upcoming, membranes.)

ONLY 1/2 OF THE BATTLE, is to offer functionality to set up and simulate the system...

The OTHER 1/2 OF THE BATTLE is a battery of tools: A collaboration of software engineering, data science, numerical methods, biochemistry & biology, among other fields


Version History

Examples


From experiment macromolecules_1:

Release Beta 28.2


From experiment enzyme_1:

Release Beta 27


From experiment variable_steps_1:

Release Beta 25


From experiment negative_concentrations_1:

Release Beta 24


From experiment impossible_1:

Release Beta 23


From experiment large_time_steps_1:

Release Beta 22


From experiment cycles_1:

Release Beta 21


From experiment down_regulate_1:

Release Beta 20


From experiment cascade_1:

Release Beta 19


Version History