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8-min video – best watched full-screen, at high resolution! |  |
A PLATFORM for SYSTEMS BIOLOGY
A growing set of tools to wrestle the complications of numerical solutions to complex dynamical systems,
such as cycles and webs of biochemical reactions, optionally with macro-molecules, spatial components and diffusion (plus, upcoming, membranes.)
ONLY 1/2 OF THE BATTLE, is to offer functionality to set up and simulate the system...
The OTHER 1/2 OF THE BATTLE is a battery of tools:
ONLY 1/2 OF THE BATTLE, is to offer functionality to set up and simulate the system...
The OTHER 1/2 OF THE BATTLE is a battery of tools:
- to tame numerical instabilities
- to throttle up/down the computational effort
- to visualize & analyze the results
- to provide helpful diagnostics
- to integrate high-performance computing
- to provide an API that is simple, convenient & intuitive
Version History
Examples
From experiment macromolecules_1:
From experiment enzyme_1:
From experiment variable_steps_1:
From experiment negative_concentrations_1:
From experiment impossible_1:
From experiment large_time_steps_1:
From experiment cycles_1:
From experiment down_regulate_1:
From experiment cascade_1:
Version History